Spatio-temporal modelling of influenza A virus infection: the impact of defective interfering particles on type I interferon response.

Publication Year
2025

Type

Journal Article
Abstract

Defective interfering particles (DIPs) are incomplete viral genomes that modulate infection by competing with wild-type viruses and activating innate immunity. How DIPs interact with type I interferon (IFN) in spatially structured environments remains unclear. Focusing initially on influenza A, we developed a spatially explicit, stochastic model of viral infection integrating virus and DIP replication, IFN signalling, and alternative dispersal modes. We find that: (1) our model captures the ring-like and patchy plaque morphologies observed experimentally; (2) IFN production peaks at an intermediate DIP ratio, reflecting a trade-off between early immune activation and sufficient co-infection; and (3) even a small fraction of long-range spread of virus and DIPs escape containment despite longer IFN ranges; this causes stronger antiviral responses but earlier peaks in lysis at similar levels of cell loss. The model is available as an interactive platform: https://shiny-spatial-infection-app-production.up.railway.app/ .

Journal
bioRxiv : the preprint server for biology
Date Published
11/2025
ISSN Number
2692-8205
Alternate Journal
bioRxiv
PMCID
PMC12632340
PMID
41278742